Workshop
8th Workshop on Computer Vision for Microscopy Image Analysis
Mei Chen · Daniel J. Hoeppner · Dimitris N. Metaxas · Steve Finkbeiner
East 10
Mon 19 Jun, 8 a.m. PDT
Keywords: CV + X: Biomedical
High-throughput microscopy enables researchers to acquire thousands of images automatically over a matter of hours. This makes it possible to conduct large-scale, image-based experiments for biological discovery. The main challenge and bottleneck in such experiments is the conversion of “big visual data” into interpretable information and hence discoveries. Visual analysis of large-scale image data is a daunting task. Cells need to be located and their phenotype (e.g., shape) described. The behaviors of cell components, cells, or groups of cells need to be analyzed. The cell lineage needs to be traced. Not only do computers have more “stamina” than human annotators for such tasks, they also perform analysis that is more reproducible and less subjective. The post-acquisition component of high-throughput microscopy experiments calls for effective and efficient computer vision techniques.
This workshop will bring together computer vision experts from academia, industry, and government who have made progress in developing computer vision tools for microscopy image analysis. It will provide a comprehensive forum on this topic and foster in-depth discussion of technical and application issues as well as cross-disciplinary collaboration. It will also serve as an introduction to researchers and students curious about this important and fertile field.
Schedule
Mon 8:30 a.m. - 8:40 a.m.
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Opening Remarks & Logistics of the Day
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Presentation
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Mon 8:40 a.m. - 9:20 a.m.
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Machine learning challenges in spatial single cell omics analysis
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Invited Talk
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Mon 9:20 a.m. - 10:00 a.m.
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AI for breast cancer diagnostics 2.0
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Invited Talk
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Mon 10:00 a.m. - 10:10 a.m.
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Giga-SSL: Self-Supervised Learning for Gigapixel Images
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Accepted Paper
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Mon 10:10 a.m. - 10:20 a.m.
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Fast local thickness
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Accepted Paper
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Mon 10:20 a.m. - 10:25 a.m.
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Automatic analysis of cryo-electron tomography using computer vision and machine learning
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Work-in-Progress Spotlight
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Mon 10:25 a.m. - 10:30 a.m.
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Performance Review of Retraining and Transfer Learning of DeLTA 2.0 for Image Segmentation for Pseudomonas fluorescens SBW25
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Work-in-Progress Spotlight
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Mon 10:30 a.m. - 10:40 a.m.
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Coffee Break
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Mon 10:40 a.m. - 10:50 a.m.
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A Super-Resolution Training Paradigm Based on Low-Resolution Data Only to Surpass the Technical Limits of STEM and STM Microscopy
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Accepted Paper
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Mon 10:50 a.m. - 11:00 a.m.
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New Bayesian Focal Loss Targeting Aleatoric Uncertainty Estimate: Pollen Image Recognition
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Accepted Paper
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Mon 11:00 a.m. - 11:05 a.m.
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Virtual Staining for Pixel-Wise and Quantitative Analysis of Single Cell Image Analysis
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Work-in-Progress Spotlight
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Mon 11:05 a.m. - 11:10 a.m.
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Self-supervised clustering and annotation of single-cell trajectories
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Work-in-Progress Spotlight
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Mon 11:10 a.m. - 11:15 a.m.
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Spatio-temporal graph attention networks predict single cell response to cancer treatment in live 3D tumour spheroids
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Work-in-Progress Spotlight
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Mon 11:15 a.m. - 11:55 a.m.
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How Can Humans Learn from AI
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Invited Talk
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Mon 11:55 a.m. - 1:00 p.m.
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Lunch Break
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Mon 1:00 p.m. - 1:40 p.m.
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Decoding hidden signal from neurodegenerative drug discovery high-content screens
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Invited Talk
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Mon 1:40 p.m. - 2:20 p.m.
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Multimodal Computational Pathology
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Invited Talk
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Mon 2:20 p.m. - 2:30 p.m.
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Learning to Correct Sloppy Annotations in Electron Microscopy Volumes
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Accepted Paper
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Mon 2:30 p.m. - 2:40 p.m.
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Theia: Bleed-Through Estimation with Convolutional Neural Networks
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Accepted Paper
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Mon 2:40 p.m. - 2:50 p.m.
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RxRx1: A Dataset for Evaluating Experimental Batch Correction Methods
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Accepted Paper
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Mon 2:50 p.m. - 3:00 p.m.
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An Ensemble Method with Edge Awareness for Abnormally Shaped Nuclei Segmentation
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Accepted Paper
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Mon 3:00 p.m. - 3:30 p.m.
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Coffee Break
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Mon 3:30 p.m. - 4:00 p.m.
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TBD
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Invited Talk
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Mon 4:00 p.m. - 4:40 p.m.
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Point-and-click: using microscopy images to guide spatial next generation sequencing measurements
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Invited Talk
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Mon 4:40 p.m. - 4:50 p.m.
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Out of Distribution Generalization via Interventional Style Transfer in Single-Cell Microscopy
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Accepted Paper
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Mon 4:50 p.m. - 5:00 p.m.
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One-shot and Partially-Supervised Cell Image Segmentation Using Small Visual Prompt
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Accepted Paper
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Mon 5:00 p.m. - 5:30 p.m.
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Enhancing SAM's Biomedical Image Analysis through Prompt-based Learning
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Invited Talk
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Mon 5:30 p.m. - 5:45 p.m.
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Challenge Reportout
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Challenge
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Mon 5:45 p.m. - 5:50 p.m.
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Closing Remarks
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Presentation
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